University
of Missouri-Columbia
|
| MU
Search Engine |
| MU
Library |
| Department
of Biochemistry |
| Office
of Research |
Calculators
|
| Calculate UV spectrum of DNA at
IDT Biophysics |
| Matthews coefficient
calculator |
|
| Databases
and Servers |
| PDB |
| NCBI |
| ExPASy |
EBI Macromolecular Structure Database
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| OCA |
| PDBsum |
| Genecards |
| SCOP
|
| CATH |
| TargetDB: Target Search
For Structural Genomics |
| Cambridge
Structural Database |
| Andrew Martin's
antibody website |
| Nucleic
acid data base |
| BRENDA: Comprehensive
Enzyme Info. System |
| Human
protein reference database |
| PICES: protein sequence
culling |
IHOP-get info on any
gene/protein
|
Nuclear Protein Database
|
Funding
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| NIH |
| NIH
Center for Scientific Review |
| CRISP |
| NSF |
Diffraction
Data Processing
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| HKL |
LABELIT autoindexing server
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| Phasing |
| SOLVE |
SHARP
|
| Ethan Merritt's Anomalous Page |
| Heavy atom
databank |
epmr
molecular replacement
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| Refinement
|
CNS
server v1.1
|
CNS server v1.2
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| X-plor
server |
Model
building
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Coot
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| ARP/wARP |
MAID
|
Xpleo loop
building server
|
Xpleo
documentation
|
Build nucleic acids
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| PRODRG |
Miscellaneous
Crystallography Software
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| CCP4 |
| Uppsala Software Factory |
UCLA merohedral
twinning server
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UCLA Padilla-Yeates
twinning server
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Diffraction
anisotropy server
|
Matthews coefficient
calculator
|
bilbao crystallographic server (has SG
list and lots of tools)
|
Structure
Viewing and Analysis
|
Pymol
|
Protein
Explorer
|
| Ligand-Protein
Contacts |
pKA calculation
H++
|
pKA calculation with PROPKA
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CASTP
|
| MOLMOL |
| HBPLUS |
| GRASP |
Helix-turn-helix prediction
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Topology of protein structure
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Relibase: search protein-ligand
databases
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| ConSurf: surface-mapping
phylogenetic
information |
PROMOTIF-analyzes
secondary structure elements like interhelix angle, main-chain
Hbonding, etc.
|
Generate symmetry
equivalent molecules
|
Docking
|
| Autodock |
| Dock |
Zinc compound database for
virtual screening
|
| PRODRG |
PatchDock
protein-protein docking
|
ClusPro protein-protein docking
|
ZDOCK
protein-protein docking
|
MEDock
|
Delarue group docking
refinement
|
3D
Structural Alignment
|
Protein3DFit
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| DALI
|
SSM
|
SSAP
|
| MultiProt:
multiple structure alignment |
MASS: multiple structure
alignment
|
| TOP |
Structure
Validation
|
PDB Validation Server
|
Molprobity
|
CCP4 Study Weekends Proceedings
|
Experimental
phasing
|
| Molecular
replacement |
| Data
collection and processing |
Sequence Alignment
|
| Biology Workbench |
ch.EMBnet (LALIGN,
BOXSHADE, ClustalW, and more)
|
LALIGN server
|
| BLAST |
| T-Coffee
multiple sequence alignment |
| Box
Shade server |
| Sequence manipulation site |
Modeling
and Molecular Dynamics
|
Modeller (Sali group)
|
Swiss-Model
|
| BIOMER: build ideal
helices, strands, DNA |
NAMD
molecular dynamics software
|
Database of
Simulated Molecular Motions
|
Delarue group morphing
|
|
Professional Societies/Associations
|
ACA
|
IUCR
|
Synchrotrons
|
ALS
4.2.2
|
ALS
|
ALS ring status
|
APS
|
NSLS
|
SSRL
|
| BioSync |
Se-Met
expression recipes
|
| Recipe 1 |
Unix tutorials
|
| Unix tutorial from Ian Tickle |
| Unix help for users |
X-ray Crystallography Education
|
| Gale Rhodes' glossary |
| Crystal
Lattice Structures |
| UCLA
course |
Sawaya's
crystallography tutorials
|
| Bart Hazes data collection page |
| Crystallography
101 by Bernhard Rupp |
Chemistry
and Biochemistry Education
|
Biochemistry
of metabolism
|
Genetics Home Reference
|
Understanding entropy
|
Databases of mutant proteins
|
ProTherm
|
| Protein Mutant
Database |
MutaProt
|
| Protein-ligand
and protein-protein interaction |
BIND (biomolecular interaction
network database)
|
Binding MOAD (protein-ligand)
|
PDBbind
database (protein-ligand)
|
Finding
ligands and fragments of ligands in the PDB
|
PDB
draw ligand and search
|
ebi draw ligand and
search
|
ebi text-based search
|
| Miscellaneous
Websites |
| organic
chemistry
helper |
protein refolding database
|
eMolecules search for vendors of
small molecules
|