University
of
Missouri-Columbia
|
| MU
Search
Engine |
| MU
Library |
| Department
of
Biochemistry |
| Office
of
Research |
Calculators
|
| Calculate UV spectrum of DNA at
IDT Biophysics |
| Matthews coefficient
calculator |
Gridzilla crystal grid maker
|
Babel molecule
format conveter
|
|
| Databases
and
Servers
|
| PDB |
| NCBI |
| ExPASy |
EBI Macromolecular Structure Database
|
| OCA |
| PDBsum |
| Genecards |
| SCOP
|
| CATH |
| TargetDB: Target Search
For Structural Genomics |
| Cambridge
Structural
Database |
| Andrew Martin's
antibody website |
| Nucleic
acid
data
base |
| BRENDA: Comprehensive
Enzyme
Info.
System |
| Human
protein
reference
database |
| PICES: protein sequence
culling |
IHOP-get info on any
gene/protein
|
Nuclear Protein Database
|
Funding
|
| NIH |
| NIH
Center
for
Scientific Review |
| CRISP |
| NSF |
Diffraction
Data Processing
|
| HKL |
LABELIT autoindexing server
|
| Phasing |
| SOLVE |
SHARP
|
| Ethan Merritt's Anomalous Page |
| Heavy atom
databank |
epmr
molecular
replacement
|
| Refinement
|
CNS
server v1.1
|
CNS server v1.2
|
| X-plor
server |
Model
building
|
Coot
|
| ARP/wARP |
MAID
|
Xpleo loop
building server
|
Xpleo
documentation
|
Build nucleic acids
|
| PRODRG |
Grade ligand server
|
Miscellaneous
Crystallography
Software
|
| CCP4 |
| Uppsala Software Factory |
UCLA merohedral
twinning server
|
UCLA Padilla-Yeates
twinning server
|
Diffraction
anisotropy server
|
Matthews coefficient
calculator
|
bilbao crystallographic server (has SG
list and lots of tools)
|
Structure
Viewing
and
Analysis
|
Pymol
|
APBS: Adaptive Poisson-Boltzmann
Solver
|
Convert pdb to pqr for APBS
|
Protein
Explorer
|
| Ligand-Protein
Contacts |
pKA calculation
H++
|
pKA calculation with PROPKA
|
CASTP
|
| MOLMOL |
| HBPLUS |
| GRASP |
Helix-turn-helix prediction
|
Topology of protein structure
|
Relibase: search protein-ligand
databases
|
| ConSurf: surface-mapping
phylogenetic
information |
PROMOTIF-analyzes
secondary
structure
elements like interhelix angle, main-chain
Hbonding, etc.
|
Generate symmetry
equivalent molecules
|
Docking
|
| Autodock |
| Dock |
Zinc compound database for
virtual screening
|
| PRODRG |
PatchDock
protein-protein docking
|
ClusPro protein-protein docking
|
ZDOCK
protein-protein
docking
|
MEDock
|
Delarue group docking
refinement
|
3D
Structural
Alignment
|
Protein3DFit
|
| DALI
|
SSM
|
SSAP
|
| MultiProt:
multiple structure alignment |
MASS: multiple structure
alignment
|
| TOP |
Structure
Validation
|
PDB Validation Server
|
Molprobity
|
CCP4 Study Weekends Proceedings
|
Experimental
phasing
|
| Molecular
replacement |
| Data
collection and processing |
Sequence Alignment
|
| Biology Workbench |
ch.EMBnet (LALIGN,
BOXSHADE, ClustalW, and more)
|
LALIGN server
|
| BLAST |
| T-Coffee
multiple
sequence
alignment |
| Box
Shade server |
| Sequence manipulation site |
Modeling
and Molecular Dynamics
|
Modeller (Sali group)
|
Swiss-Model
|
| BIOMER: build ideal
helices, strands, DNA |
NAMD
molecular
dynamics
software
|
Database of
Simulated Molecular Motions
|
Delarue group morphing
|
|
Professional Societies/Associations
|
ACA
|
IUCR
|
Synchrotrons
|
ALS
4.2.2
|
ALS
|
ALS ring status
|
APS
|
NSLS
|
SSRL
|
| BioSync |
Se-Met
expression
recipes
|
| Recipe 1 |
Unix tutorials
|
| Unix tutorial from Ian Tickle |
| Unix help for users |
X-ray Crystallography Education
|
| Gale Rhodes' glossary |
| Crystal
Lattice
Structures |
| UCLA
course |
Sawaya's
crystallography
tutorials
|
| Bart Hazes data collection page |
| Crystallography
101
by
Bernhard Rupp |
Chemistry
and
Biochemistry
Education
|
Biochemistry
of
metabolism
|
Genetics Home Reference
|
Understanding entropy
|
Databases of mutant proteins
|
ProTherm
|
| Protein Mutant
Database |
MutaProt
|
| Protein-ligand
and
protein-protein
interaction |
BIND (biomolecular interaction
network database)
|
Binding MOAD (protein-ligand)
|
PDBbind
database
(protein-ligand)
|
Finding
ligands
and
fragments of ligands in the PDB
|
PDB
draw
ligand
and search
|
ebi draw ligand and
search
|
ebi text-based search
|
| Miscellaneous
Websites |
| organic
chemistry
helper |
protein refolding database
|
eMolecules search for vendors of
small molecules
|